Tax and bookkeeping for new businesses: avoid the surprise bill in year two

Know which tax applies, register for VAT at the right threshold and set money aside from your first invoice.

8 steps Updated 2026
Step 6 of 8: Start in eight steps

The tax bill that arrives in year two

Set aside VAT and income tax from your first invoice, and keep records that will stand up to a tax inspection.

Tax and bookkeeping are the topics new business owners put off longest. Understandable, but expensive. Whoever reserves nothing in the first year often receives the bill for that year at the same moment as the first advance payment for the next. In the UK, for example, the self-employed generally pay two payments on account, each half of the previous year's bill, due by 31 January and 31 July (source: GOV.UK, October 2024). A few habits from day one prevent that double hit, wherever you are.

Income tax on profit or corporate tax?

Which tax you pay depends on your legal structure, not on the size of the business.

Sole trader or partnership

The profit is your personal income. You pay income tax on it, plus social contributions that an employer would otherwise withhold. In the US the self-employment tax is 15.3%, due once net earnings reach $400 (source: IRS, June 2026). In the UK Class 4 National Insurance is 6% on profits between £12,570 and £50,270 and 2% above (source: GOV.UK, September 2026). Founders often forget this layer.

Company

The company pays corporate tax on its profit. In the UK that is 19% on profits of £50,000 or less and 25% above £250,000, with marginal relief in between (source: GOV.UK, October 2026). You then pay personal tax on the salary or dividends you take out; see how to pay yourself.

Which start-up costs are deductible?

The principle is similar in most systems: costs incurred wholly for the business reduce your taxable profit, while assets that last several years are written off over time through depreciation or capital allowances. Costs made before you start trading, such as market research, advice or a website, are often deductible too, under conditions. Two verified examples:

  • United States: you can elect to deduct up to $5,000 of start-up costs and up to $5,000 of organisational costs, reduced by the amount by which those costs exceed $50,000; the rest is amortised (source: IRS, December 2024).
  • United Kingdom: pre-trading expenditure incurred within seven years before the trade starts is allowed if it would have been deductible after the start, but not for capital expenditure (source: HMRC, August 2026).

Keep every receipt from the preparation phase, with a note of what it was for.

VAT, GST and sales tax: when must you register?

Value added tax works the same way almost everywhere. You charge it on your sales, deduct the tax on your business purchases and pay the difference. The money your customer pays as VAT was never yours. Countries set a turnover threshold above which registration is compulsory, and many offer small businesses an exemption below it. The trade-off is always the same: under an exemption you charge no VAT, but you cannot reclaim VAT on your costs either.

MarketWhen VAT becomes compulsorySmall business rule
United KingdomRegister when taxable turnover goes over £90,000 in the last 12 months, or is expected to within the next 30 days (source: GOV.UK, September 2026)Voluntary registration below the threshold (source: GOV.UK, September 2026)
European UnionSet nationallySME scheme with national thresholds of up to €85,000; cross-border use if EU-wide turnover stays under €100,000; no input VAT deduction (source: Your Europe, July 2026)
GermanyAbove the small business threshold you charge VATAnnual threshold €25,000, with a transitional band up to €100,000 (source: European Commission, October 2026)
NetherlandsAbove the small business threshold you charge VATSmall businesses scheme (KOR) up to €20,000 a year: no VAT charged, no returns, no VAT deduction on costs (source: business.gov.nl, October 2026)
AustraliaRegister within 21 days once GST turnover reaches A$75,000 (A$150,000 for non-profits); taxi and ride-sourcing always (source: ATO, September 2026)Voluntary registration below; an ABN is needed first (source: ATO, September 2026)
CanadaRegister when taxable revenue exceeds C$30,000 in a single calendar quarter or over the last four consecutive quarters (source: CRA, January 2026)Small suppliers below that may register voluntarily (source: CRA, January 2026)
United StatesNo national VAT; sales tax is a state matter, with economic nexus thresholds for remote sellers such as more than $500,000 of sales into California (source: California Department of Tax and Fee Administration, October 2026)In Texas, remote sellers with less than $500,000 of Texas revenue in the preceding twelve months need no permit and collect no use tax (source: Texas Comptroller, May 2026)

Thresholds checked in October 2026. They change, and some EU countries were still implementing the new SME scheme (source: European Commission, October 2026).

Check your country

  • Threshold: the amount, which turnover counts, and whether the test looks back, forward or both.
  • Exemption: is there a small business scheme, and what does it cost you in lost VAT deductions?
  • Returns: monthly, quarterly or yearly, and whether a nil return is required.
  • Cross-border sales: distance selling and digital services follow separate rules.

How to avoid a surprise tax bill

  1. 01

    Move VAT out on receipt

    Each time a customer pays, transfer the VAT part to a separate savings account. Then the return is a formality, not a cash problem.

  2. 02

    Reserve a fixed share of profit

    Work out with your marginal rates, or with your accountant, what share of profit goes to income tax and social contributions, and transfer it monthly.

  3. 03

    Pay in advance where the system expects it

    In the US, individuals generally make quarterly estimated tax payments if they expect to owe $1,000 or more, and corporations at $500 (source: IRS, September 2026). Australian PAYG instalments are regular prepayments of tax on business and investment income (source: ATO, October 2023). Where advance payments are voluntary, they still spread the burden.

  4. 04

    Keep your records up to date

    Book weekly, not at year end. With late bookkeeping you only find out when the return is due that the reserve was too small.

Example: what Yara sets aside

Yara is a freelance designer in a country with a VAT rate of 20%. In her first year she invoices €60,000 excluding VAT and has €9,000 of business costs excluding VAT, on which she paid €1,400 VAT.

ItemYearPer month
VAT charged (20% of €60,000)€12,000€1,000
VAT on costs, reclaimed€1,400€117
VAT to pay€10,600€883
Profit (€60,000 minus €9,000)€51,000€4,250
Tax reserve at an assumed 30% of profit€15,300€1,275
Total to set aside€25,900€2,158

If Yara saved nothing and her country uses advance payments of half the previous bill, the start of year two would bring her year-one bill of €15,300 plus a first advance of €7,650: €22,950 at once.

Fictitious Firmfocus example. The VAT rate and the 30% reserve are assumptions; your real rate depends on your country and income. The logic works in any currency.

Bookkeeping basics from day one

A business bank account keeps business and private money apart, which saves hours of sorting later. In most countries a sales invoice needs at least your name and address, the customer's details, a date, a sequential number, a description and the amount. In the EU your VAT identification number and the VAT charged must be on every invoice (source: Your Europe, May 2026). Then keep everything for as long as the law requires:

MarketHow long to keep records
United StatesGenerally 3 years; 6 years if you under-report income by more than 25%; 7 years for bad debt or worthless securities claims; employment tax records at least 4 years (source: IRS, June 2026)
United KingdomSole traders at least 5 years after the 31 January filing deadline (source: GOV.UK, September 2026); companies 6 years from the end of the financial year (source: GOV.UK, January 2025)
NetherlandsAt least 7 years; 10 years for data on immovable property (source: business.gov.nl, October 2026)
Canada6 years from the end of the last tax year the records relate to (source: CRA, August 2026)
AustraliaMost records 5 years (source: ATO, June 2026)

Small start vs larger start

Freelancer with few costs

A small business VAT exemption can save admin and make you cheaper for private customers. Check the trade-off: business customers can reclaim your VAT anyway, and you lose the deduction on your own purchases. Simple software and a monthly hour are usually enough.

Business with stock, investment or staff

Register for VAT early to reclaim the tax on your fit-out and stock. Payroll taxes, stock records and depreciation make an accountant worth the cost from the first year. Put the reserves in your cash flow forecast.

Pitfalls

  • Spending the VAT: it sits in your account but belongs to the tax authority.
  • Forgetting social contributions: income tax alone understates what you owe as a self-employed person.
  • Planning on old rules: thresholds, rates and allowances change, often every year.
  • Missing a nil return: late filing can bring a penalty even when nothing is due.

The compliance calendar lists the returns and payment dates of the first year, and pay yourself shows how tax affects what you can take out. Back to the eight steps to start a business or Start a business.

Do I have to file a VAT return if I had no turnover?
Usually yes. Once you are registered, most countries expect a return for every period, even a nil return. In the UK you must submit a VAT return even if you have no VAT to pay or reclaim (source: GOV.UK, November 2024).
Should I use a small business VAT exemption?
It suits you if your customers are mostly consumers and your costs are low. It rarely suits you if you invest heavily at the start, because you cannot reclaim the VAT on those purchases. Work out both options for your first two years before you choose.
How much should I set aside for tax?
All the VAT you charge minus the VAT you reclaim, plus a share of profit for income tax and social contributions. A practical start is a percentage between your expected average and top marginal rate, adjusted once the first return is done.
Do I need an accountant?
Not always. A freelancer with simple finances can do the bookkeeping with software. An accountant pays for themselves when you employ staff, hold stock, form a company or work across borders, and an hour of advice before you start often prevents expensive mistakes.
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